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Chapter 6 |
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The Protein Data Bank serves as a worldwide repository for the experimentally determined three-dimensional structure of biological molecules. Files containing descriptions of the molecules have the extension ".PDB" and can be viewed using a web browser plug-in (see below) or with any of a number of free or commercial Molecular Graphics applications.
To view PDB files using your web browser, you need to ensure that a "plug-in" application called Chime is installed. The Chime plug-in is available from Elsevier MDL. Click here to obtain the Chime plug-in. Refer to the system requirements for additional information. If your Browser application or Operating System doesn't support the Chime plug-in, you can still view the molecules by downloading the PDB files to disk and opening them using a molecular graphics application. Windows users can save files by right-clicking on the link and selecting "Save as..." from the pop-up menu. Macintosh users should hold down the Control (Ctrl) key, while simultaneously clicking on the link and choose "Download to disk..." from the pop-up menu. |
| Figure Number | Molecule | Links |
| Figure 6.5 | Ionizable residues in papain | View in Browser | Download to disk |
| Figure 6.8 | Yeast (Saccharomyces cerevisiae) triose phosphate isomerase | View in Browser | Download to disk |
| Figure 6.10 | Surface charge on human superoxide dismutase | View in Browser | Download to disk |
| Figure 6.13 | Yeast hexokinase | View in Browser | Download to disk |
| Figure 6.18 | Lysozyme from chicken with a trisaccharide molecule | View in Browser | Download to disk |
| Figure 6.22 | Polypeptide chains of chymotrypsinogen | View in Browser | Download to disk |
| Figure 6.22 | Polypeptide chains of a-chymotrypsin | View in Browser | Download to disk |
| Figure 6.23 | Polypeptide backbone of chymotrypsin | View in Browser | Download to disk |
| Figure 6.23 | Polypeptide backbone of trypsin | View in Browser | Download to disk |
| Figure 6.23 | Polypeptide backbone of elastase | View in Browser | Download to disk |
| Figure 6.25 | The catalytic site of chymotrypsin | View in Browser | Download to disk |
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